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Origin and spread of human mitochondrial DNA haplogroup U7

Sahakyan,H., Hooshiar Kashani,B., Tamang,R., Kushniarevich,A., Francis,A., Costa,M.D., Pathak,A.K., Khachatryan,Z., Sharma,I., van Oven,M., Parik,J., Hovhannisyan,H., Metspalu,E., Pennarun,E., Karmin,M., Tamm,E., Tambets,K., Bahmanimehr,A., Reisberg,T., Reidla,M., Achilli,A., Olivieri,A., Gandini,F., Perego,U.A., Al-Zahery,N., Houshmand,M., Sanati,M.H., Soares,P., Rai,E., Sarac,J., Saric,T., Sharma,V., Pereira,L., Fernandes,V., Cerny,V., Farjadian,S., Singh,D.P., Azakli,H., Ustek,D., Ekomasova Trofimova,N., Kutuev,I., Litvinov,S., Bermisheva,M., Khusnutdinova,E.K., Rai,N., Singh,M., Singh,V.K., Reddy,A.G., Tolk,H.V., Cvjetan,S., Lauc,L.B., Rudan,P., Michalodimitrakis,E.N., Anagnou,N.P., Pappa,K.I., Golubenko,M.V., Orekhov,V., Borinskaya,S.A., Kaldma,K., Schauer,M.A., Simionescu,M., Gusar,V., Grechanina,E., Govindaraj,P., Voevoda,M., Damba,L., Sharma,S., Singh,L., Semino,O., Behar,D.M., Yepiskoposyan,L., Richards,M.B., Metspalu,M., Kivisild,T., Thangaraj,K., Endicott,P., Chaubey,G., Torroni,A. and Villems,R.

Sci Rep 7, 46044 (2017) Publication Status: Online-Only

The role of selection in the evolution of human mitochondrial genomes

Kivisild,T., Shen,P., Wall,D.P., Do,B., Sung,R., Davis,K., Passarino,G., Underhill,P.A., Scharfe,C., Torroni,A., Scozzari,R., Modiano,D., Coppa,A., de Knijff,P., Feldman,M., Cavalli-Sforza,L.L. and Oefner,P.J.

Genetics 172 (1), 373-387 (2006)

A substantial prehistoric European ancestry amongst Ashkenazi maternal lineages

Costa,M.D., Pereira,J.B., Pala,M., Fernandes,V., Olivieri,A., Achilli,A., Perego,U.A., Rychkov,S., Naumova,O., Hatina,J., Woodward,S.R., Eng,K.K., Macaulay,V., Carr,M., Soares,P., Pereira,L. and Richards,M.B.

Nat Commun 4, 2543 (2013) Publication Status: Online-Only

Targeted retrieval and analysis of five Neandertal mtDNA genomes

Briggs,A.W., Good,J.M., Green,R.E., Krause,J., Maricic,T., Stenzel,U., Lalueza-Fox,C., Rudan,P., Brajkovic,D., Kucan,Z., Gusic,I., Schmitz,R., Doronichev,V.B., Golovanova,L.V., de la Rasilla,M., Fortea,J., Rosas,A. and Paabo,S.

Science 325 (5938), 318-321 (2009)

A complete neandertal mitochondrial genome sequence determined by high-throughput sequencing

Green,R.E., Malaspinas,A.S., Krause,J., Briggs,A.W., Johnson,P.L.F., Uhler,C., Meyer,M., Good,J.M., Maricic,T., Stenzel,U., Pruefer,K., Siebauer,M., Burbano,H.A., Ronan,M., Rothberg,J.M., Egholm,M., Rudan,P., Brajkovic,D., Kucan,Z., Gusic,I., Wikstrom,M., Laakkonen,L., Kelso,J., Slatkin,M. and Paabo,S.

Cell 134 (3), 416-426 (2008)

Mitochondrial DNA association study of type 2 diabetes with or without ischemic stroke in Taiwan

Loo,J.H., Trejaut,J.A., Yen,J.C., Chen,Z.S., Ng,W.M., Huang,C.Y., Hsu,K.N., Hung,K.H., Hsiao,Y., Wei,Y.H. and Lin,M.

BMC Res Notes 7, 223 (2014) Publication Status: Online-Only

Aboriginal Australian mitochondrial genome variation - an increased understanding of population antiquity and diversity

Nagle,N., van Oven,M., Wilcox,S., van Holst Pellekaan,S., Tyler-Smith,C., Xue,Y., Ballantyne,K.N., Wilcox,L., Papac,L., Cooke,K., van Oorschot,R.A., McAllister,P., Williams,L., Kayser,M. and Mitchell,R.J.

Sci Rep 7, 43041 (2017) Publication Status: Online-Only

Genomic landscape of human diversity across Madagascar

Pierron,D., Heiske,M., Razafindrazaka,H., Rakoto,I., Rabetokotany,N., Ravololomanga,B., Rakotozafy,L.M., Rakotomalala,M.M., Razafiarivony,M., Rasoarifetra,B., Raharijesy,M.A., Razafindralambo,L., Ramilisonina, Fanony,F., Lejamble,S., Thomas,O., Mohamed Abdallah,A., Rocher,C., Arachiche,A., Tonaso,L., Pereda-Loth,V., Schiavinato,S., Brucato,N., Ricaut,F.X., Kusuma,P., Sudoyo,H., Ni,S., Boland,A., Deleuze,J.F., Beaujard,P., Grange,P., Adelaar,S., Stoneking,M., Rakotoarisoa,J.A., Radimilahy,C. and Letellier,T.

Proc. Natl. Acad. Sci. U.S.A. (2017) In press Publication Status: Available-Online prior to print

Mitogenomic and microsatellite variation in descendants of the founder population of Newfoundland: high genetic diversity in an historically isolated population

Pope,A.M., Carr,S.M., Smith,K.N. and Marshall,H.D.

Genome 54 (2), 110-119 (2011)

Mitochondrial DNA mutations distinguish bilateral multifocal renal oncocytomas from familial Birt-Hogg-Dube tumors

Lang,M., Vocke,C.D., Merino,M.J., Schmidt,L.S. and Linehan,W.M.

Mod. Pathol. (2015) In press Publication Status: Available-Online prior to print

Complete human mtDNA genome sequences from Vietnam and the phylogeography of Mainland Southeast Asia

Duong,N.T., Macholdt,E., Ton,N.D., Arias,L., Schroder,R., Van Phong,N., Thi Bich Thuy,V., Ha,N.H., Thi Thu Hue,H., Thi Xuan,N., Thi Phuong Oanh,K., Hien,L.T., Hoang,N.H., Pakendorf,B., Stoneking,M. and Van Hai,N.

Sci Rep 8 (1), 11651 (2018) Publication Status: Online-Only

Full mtGenome reference data: Development and characterization of 588 forensic-quality haplotypes representing three U.S. populations

Just,R.S., Scheible,M.K., Fast,S.A., Sturk-Andreaggi,K., Rock,A.W., Bush,J.M., Higginbotham,J.L., Peck,M.A., Ring,J.D., Huber,G.E., Xavier,C., Strobl,C., Lyons,E.A., Diegoli,T.M., Bodner,M., Fendt,L., Kralj,P., Nagl,S., Niederwieser,D., Zimmermann,B., Parson,W. and Irwin,J.A.

Forensic Sci Int Genet 14C, 141-155 (2014) Publication Status: Available-Online prior to print

The Paleo-Indian Entry into South America According to Mitogenomes

Brandini,S., Bergamaschi,P., Cerna,M.F., Gandini,F., Bastaroli,F., Bertolini,E., Cereda,C., Ferretti,L., Gomez-Carballa,A., Battaglia,V., Salas,A., Semino,O., Achilli,A., Olivieri,A. and Torroni,A.

Mol. Biol. Evol. (2017) In press Publication Status: Available-Online prior to print

The Expanded mtDNA Phylogeny of the Franco-Cantabrian Region Upholds the Pre-Neolithic Genetic Substrate of Basques

Cardoso,S., Valverde,L., Alfonso-Sanchez,M.A., Palencia-Madrid,L., Elcoroaristizabal,X., Algorta,J., Catarino,S., Arteta,D., Herrera,R.J., Zarrabeitia,M.T., Pena,J.A. and de Pancorbo,M.M.

PLoS ONE 8 (7), E67835 (2013) Publication Status: Online-Only

Genomic insights on the ethno-history of the Maya and the 'Ladinos' from Guatemala

Sochtig,J., Alvarez-Iglesias,V., Mosquera-Miguel,A., Gelabert-Besada,M., Gomez-Carballa,A. and Salas,A.

BMC Genomics 16 (1), 131 (2015) Publication Status: Online-Only

Large scale mitochondrial sequencing in Mexican Americans suggests a reappraisal of Native American origins

Kumar,S., Bellis,C., Zlojutro,M., Melton,P.E., Blangero,J. and Curran,J.E.

BMC Evol. Biol. 11 (1), 293 (2011) Publication Status: Online-Only

High-resolution mitochondrial DNA analysis sheds light on human diversity, cultural interactions, and population mobility in Northwestern Amazonia

Arias,L., Barbieri,C., Barreto,G., Stoneking,M. and Pakendorf,B.

Am. J. Phys. Anthropol. (2017) In press Publication Status: Available-Online prior to print

Identification of Whole Mitochondrial Genomes from Venezuela and Implications on Regional Phylogenies in South America

Lee,E.J. and Merriwether,D.A.

Hum. Biol. 87 (1), 29-38 (2015)

Genetic stratigraphy of key demographic events in arabia

Fernandes,V., Triska,P., Pereira,J.B., Alshamali,F., Rito,T., Machado,A., Fajkosova,Z., Cavadas,B., Cerny,V., Soares,P., Richards,M.B. and Pereira,L.

PLoS ONE 10 (3), E0118625 (2015) Publication Status: Online-Only

Genetic Discontinuity between the Maritime Archaic and Beothuk Populations in Newfoundland, Canada

Duggan,A.T., Harris,A.J.T., Marciniak,S., Marshall,I., Kuch,M., Kitchen,A., Renaud,G., Southon,J., Fuller,B., Young,J., Fiedel,S., Golding,G.B., Grimes,V. and Poinar,H.

Curr. Biol. 27 (20), 3149-3156 (2017)

Reconciling migration models to the Americas with the variation of North American native mitogenomes

Achilli,A., Perego,U.A., Lancioni,H., Olivieri,A., Gandini,F., Hooshiar Kashani,B., Battaglia,V., Grugni,V., Angerhofer,N., Rogers,M.P., Herrera,R.J., Woodward,S.R., Labuda,D., Smith,D.G., Cybulski,J.S., Semino,O., Malhi,R.S. and Torroni,A.

Proc. Natl. Acad. Sci. U.S.A. 110 (35), 14308-14313 (2013)

Revised timeline and distribution of the earliest diverged human maternal lineages in southern Africa

Chan,E.K., Hardie,R.A., Petersen,D.C., Beeson,K., Bornman,R.M., Smith,A.B. and Hayes,V.M.

PLoS ONE 10 (3), E0121223 (2015) Publication Status: Online-Only

Complete mtDNA genomes of Filipino ethnolinguistic groups: a melting pot of recent and ancient lineages in the Asia-Pacific region

Delfin,F., Min-Shan Ko,A., Li,M., Gunnarsdottir,E.D., Tabbada,K.A., Salvador,J.M., Calacal,G.C., Sagum,M.S., Datar,F.A., Padilla,S.G., De Ungria,M.C. and Stoneking,M.

Eur. J. Hum. Genet. (2013) In press Publication Status: Available-Online prior to print

Mitochondrial DNA signals of late glacial recolonization of europe from near eastern refugia

Pala,M., Olivieri,A., Achilli,A., Accetturo,M., Metspalu,E., Reidla,M., Tamm,E., Karmin,M., Reisberg,T., Hooshiar Kashani,B., Perego,U.A., Carossa,V., Gandini,F., Pereira,J.B., Soares,P., Angerhofer,N., Rychkov,S., Al-Zahery,N., Carelli,V., Sanati,M.H., Houshmand,M., Hatina,J., Macaulay,V., Pereira,L., Woodward,S.R., Davies,W., Gamble,C., Baird,D., Semino,O., Villems,R., Torroni,A. and Richards,M.B.

Am. J. Hum. Genet. 90 (5), 915-924 (2012)

The Basque Paradigm: Genetic Evidence of a Maternal Continuity in the Franco-Cantabrian Region since Pre-Neolithic Times

Behar,D.M., Harmant,C., Manry,J., van Oven,M., Haak,W., Martinez-Cruz,B., Salaberria,J., Oyharcabal,B., Bauduer,F., Comas,D. and Quintana-Murci,L.

Am. J. Hum. Genet. 90 (3), 486-493 (2012)

Complete mitochondrial genomes of Thai and Lao populations indicate an ancient origin of Austroasiatic groups and demic diffusion in the spread of Tai-Kadai languages

Kutanan,W., Kampuansai,J., Srikummool,M., Kangwanpong,D., Ghirotto,S., Brunelli,A. and Stoneking,M.

Hum. Genet. (2016) In press Publication Status: Available-Online prior to print

Internal diversification of mitochondrial haplogroup r0a reveals post-last glacial maximum demographic expansions in South arabia

Cerny,V., Mulligan,C.J., Fernandes,V., Silva,N.M., Alshamali,F., Non,A., Harich,N., Cherni,L., El Gaaied,A.B., Al-Meeri,A. and Pereira,L.

Mol. Biol. Evol. 28 (1), 71-78 (2011)

The history of the North African mitochondrial DNA haplogroup U6 gene flow into the African, Eurasian and American continents

Secher,B., Fregel,R., Larruga,J.M., Cabrera,V.M., Endicott,P., Pestano,J.J. and Gonzalez,A.M.

BMC Evol. Biol. 14, 109 (2014) Publication Status: Online-Only

Early austronesians: into and out of Taiwan

Ko,A.M., Chen,C.Y., Fu,Q., Delfin,F., Li,M., Chiu,H.L., Stoneking,M. and Ko,Y.C.

Am. J. Hum. Genet. 94 (3), 426-436 (2014)

Insights into the demographic history of african pygmies from complete mitochondrial genomes

Batini,C., Lopes,J., Behar,D.M., Calafell,F., Jorde,L.B., van der Veen,L., Quintana-Murci,L., Spedini,G., Destro-Bisol,G. and Comas,D.

Mol. Biol. Evol. 28 (2), 1099-1110 (2011)

Mitochondrial sequence variation in african-american primary open-angle glaucoma patients

Collins,D.W., Gudiseva,H.V., Trachtman,B.T., Jerrehian,M., Gorry,T., Merritt Iii,W.T., Rhodes,A.L., Sankar,P.S., Regina,M., Miller-Ellis,E. and O'Brien,J.M.

PLoS ONE 8 (10), E76627 (2013) Publication Status: Online-Only

Counting the founders: the matrilineal genetic ancestry of the Jewish Diaspora

Behar,D.M., Metspalu,E., Kivisild,T., Rosset,S., Tzur,S., Hadid,Y., Yudkovsky,G., Rosengarten,D., Pereira,L., Amorim,A., Kutuev,I., Gurwitz,D., Bonne-Tamir,B., Villems,R. and Skorecki,K.

PLoS ONE 3 (4), E2062 (2008) Publication Status: Online-Only

Mitogenomic diversity and differentiation of the Buryats

Derenko,M., Denisova,G., Malyarchuk,B., Dambueva,I. and Bazarov,B.

J. Hum. Genet. (2017) In press Publication Status: Available-Online prior to print

Mitochondrial haplogroup H1 in north Africa: an early holocene arrival from Iberia

Ottoni,C., Primativo,G., Hooshiar Kashani,B., Achilli,A., Martinez-Labarga,C., Biondi,G., Torroni,A. and Rickards,O.

PLoS ONE 5 (10), E13378 (2010) Publication Status: Online-Only

Rate variation between mitochondrial domains and adaptive evolution in humans

Ingman,M. and Gyllensten,U.

Hum. Mol. Genet. 16 (19), 2281-2287 (2007)

Divorcing the Late Upper Palaeolithic demographic histories of mtDNA haplogroups M1 and U6 in Africa

Pennarun,E., Kivisild,T., Metspalu,E., Metspalu,M., Reisberg,T., Behar,D.M., Jones,S.C. and Villems,R.

BMC Evol. Biol. 12 (1), 234 (2012) Publication Status: Online-Only

MtDNA analysis reveals enriched pathogenic mutations in Tibetan highlanders

Kang,L., Zheng,H.X., Zhang,M., Yan,S., Li,L., Liu,L., Liu,K., Hu,K., Chen,F., Ma,L., Qin,Z., Wang,Y., Wang,X. and Jin,L.

Sci Rep 6, 31083 (2016) Publication Status: Online-Only

Complete mitochondrial DNA analysis of eastern eurasian haplogroups rarely found in populations of northern Asia and eastern europe

Derenko,M., Malyarchuk,B., Denisova,G., Perkova,M., Rogalla,U., Grzybowski,T., Khusnutdinova,E., Dambueva,I. and Zakharov,I.

PLoS ONE 7 (2), E32179 (2012) Publication Status: Online-Only

Sex-specific genetic diversity is shaped by cultural factors in Inner Asian human populations

Marchi,N., Hegay,T., Mennecier,P., Georges,M., Laurent,R., Whitten,M., Endicott,P., Aldashev,A., Dorzhu,C., Nasyrova,F., Chichlo,B., Segurel,L. and Heyer,E.

Am. J. Phys. Anthropol. (2017) In press Publication Status: Available-Online prior to print

Early Holocenic and Historic mtDNA African Signatures in the Iberian Peninsula: The Andalusian Region as a Paradigm

Hernandez,C.L., Soares,P., Dugoujon,J.M., Novelletto,A., Rodriguez,J.N., Rito,T., Oliveira,M., Melhaoui,M., Baali,A., Pereira,L. and Calderon,R.

PLoS ONE 10 (10), E0139784 (2015) Publication Status: Online-Only

Large-scale mitochondrial DNA analysis in Southeast Asia reveals evolutionary effects of cultural isolation in the multi-ethnic population of Myanmar

Summerer,M., Horst,J., Erhart,G., Weissensteiner,H., Schonherr,S., Pacher,D., Forer,L., Horst,D., Manhart,A., Horst,B., Sanguansermsri,T. and Kloss-Brandstatter,A.

BMC Evol. Biol. 14 (1), 17 (2014) Publication Status: Online-Only

Bayesian analyses of Yemeni mitochondrial genomes suggest multiple migration events with Africa and Western Eurasia

Vyas,D.N., Kitchen,A., Miro-Herrans,A.T., Pearson,L.N., Al-Meeri,A. and Mulligan,C.J.

Am. J. Phys. Anthropol. 159 (3), 382-393 (2016)

Revising mtDNA haplotypes of the ancient Hungarian conquerors with next generation sequencing

Neparaczki,E., Kocsy,K., Toth,G.E., Maroti,Z., Kalmar,T., Bihari,P., Nagy,I., Palfi,G., Molnar,E., Rasko,I. and Torok,T.

PLoS ONE 12 (4), E0174886 (2017) Publication Status: Online-Only

Deciphering the signature of selective constraints on cancerous mitochondrial genome

Liu,J., Wang,L.D., Sun,Y.B., Li,E.M., Xu,L.Y., Zhang,Y.P., Yao,Y.G. and Kong,Q.P.

Mol. Biol. Evol. 29 (4), 1255-1261 (2012)

Detecting the somatic mutations spectrum of Chinese lung cancer by analyzing the whole mitochondrial DNA genomes

Fang,Y., Huang,J., Zhang,J., Wang,J., Qiao,F., Chen,H.M. and Hong,Z.P.

Mitochondrial DNA (2013) In press Publication Status: Available-Online prior to print

Mitochondrial DNA background modulates the assembly kinetics of OXPHOS complexes in a cellular model of mitochondrial disease

Pello,R., Martin,M.A., Carelli,V., Nijtmans,L.G., Achilli,A., Pala,M., Torroni,A., Gomez-Duran,A., Ruiz-Pesini,E., Martinuzzi,A., Smeitink,J.A., Arenas,J. and Ugalde,C.

Hum. Mol. Genet. 17 (24), 4001-4011 (2008)

Over the sands and far away: Interpreting an Iberian mitochondrial lineage with ancient Western African origins

Pardinas,A.F., Martinez,J.L., Roca,A., Garcia-Vazquez,E. and Lopez,B.

Am. J. Hum. Biol. (2014) In press Publication Status: Available-Online prior to print

The dazzling array of basal branches in the mtDNA macrohaplogroup M from India as inferred from complete genomes

Sun,C., Kong,Q.P., Palanichamy,M.G., Agrawal,S., Bandelt,H.J., Yao,Y.G., Khan,F., Zhu,C.L., Chaudhuri,T.K. and Zhang,Y.P.

Mol. Biol. Evol. 23 (3), 683-690 (2006)

Female exogamy and gene pool diversification at the transition from the Final Neolithic to the Early Bronze Age in central Europe

Knipper,C., Mittnik,A., Massy,K., Kociumaka,C., Kucukkalipci,I., Maus,M., Wittenborn,F., Metz,S.E., Staskiewicz,A., Krause,J. and Stockhammer,P.W.

Proc. Natl. Acad. Sci. U.S.A. 114 (38), 10083-10088 (2017)

Disruptive mitochondrial DNA mutations in complex I subunits are markers of oncocytic phenotype in thyroid tumors

Gasparre,G., Porcelli,A.M., Bonora,E., Pennisi,L.F., Toller,M., Iommarini,L., Ghelli,A., Moretti,M., Betts,C.M., Martinelli,G.N., Ceroni,A.R., Curcio,F., Carelli,V., Rugolo,M., Tallini,G. and Romeo,G.

Proc. Natl. Acad. Sci. U.S.A. 104 (21), 9001-9006 (2007)

Mitochondrial genome diversity in arctic Siberians, with particular reference to the evolutionary history of Beringia and Pleistocenic peopling of the Americas

Volodko,N.V., Starikovskaya,E.B., Mazunin,I.O., Eltsov,N.P., Naidenko,P.V., Wallace,D.C. and Sukernik,R.I.

Am. J. Hum. Genet. 82 (5), 1084-1100 (2008)

The First Modern Human Dispersals across Africa

Rito,T., Richards,M.B., Fernandes,V., Alshamali,F., Cerny,V., Pereira,L. and Soares,P.

PLoS ONE 8 (11), E80031 (2013) Publication Status: Online-Only

Spectrum of mitochondrial genomic variation and associated clinical presentation of prostate cancer in South African men

McCrow,J.P., Petersen,D.C., Louw,M., Chan,E.K., Harmeyer,K., Vecchiarelli,S., Lyons,R.J., Bornman,M.S. and Hayes,V.M.

Prostate 76 (4), 349-358 (2016)

Complete mitochondrial genome sequences for 265 African American and U.S. 'Hispanic' individuals

Just,R.S., Diegoli,T.M., Saunier,J.L., Irwin,J.A. and Parsons,T.J.

Forensic Sci Int Genet 2 (3), E45-E48 (2008)

Deep rooting in-situ expansion of mtDNA Haplogroup R8 in South Asia

Thangaraj,K., Nandan,A., Sharma,V., Sharma,V.K., Eaaswarkhanth,M., Patra,P.K., Singh,S., Rekha,S., Dua,M., Verma,N., Reddy,A.G. and Singh,L.

PLoS ONE 4 (8), E6545 (2009) Publication Status: Online-Only

Maternal History of Oceania from Complete mtDNA Genomes: Contrasting Ancient Diversity with Recent Homogenization Due to the Austronesian Expansion

Duggan,A.T., Evans,B., Friedlaender,F.R., Friedlaender,J.S., Koki,G., Merriwether,D.A., Kayser,M. and Stoneking,M.

Am. J. Hum. Genet. 94 (5), 721-733 (2014)

Drawing the history of the Hutterite population on a genetic landscape: inference from Y-chromosome and mtDNA genotypes

Pichler,I., Fuchsberger,C., Platzer,C., Caliskan,M., Marroni,F., Pramstaller,P.P. and Ober,C.

Eur. J. Hum. Genet. 18 (4), 463-470 (2010) Erratum:[Eur J Hum Genet. 2010 Apr;18(4):509]

East Eurasian ancestry in the middle of Europe: genetic footprints of Steppe nomads in the genomes of Belarusian Lipka Tatars

Pankratov,V.V., Litvinov,S.S., Kassian,A.A., Shulhin,D.D., Tchebotarev,L.L., Yunusbayev,B.B., Mols,M.M., Sahakyan,H.H., Yepiskoposyan,L.L., Rootsi,S.S., Metspalu,E.E., Golubenko,M.M., Ekomasova,N.N., Akhatova,F.F., Khusnutdinova,E.E., Heyer,E.E., Endicott,P.P., Derenko,M.M., Malyarchuk,B.B., Metspalu,M.M., Davydenko,O.O., Villems,R.R. and Kushniarevich,A.A.

Sci Rep 6, 30197 (2016) Publication Status: Online-Only

Inherited and somatic mitochondrial DNA mutations in Guam amyotrophic lateral sclerosis and parkinsonism-dementia

Reiff,D.M., Spathis,R., Chan,C.W., Vilar,M.G., Sankaranarayanan,K., Lynch,D., Ehrlich,E., Kerath,S., Chowdhury,R., Robinowitz,L., Koji Lum,J. and Garruto,R.M.

Neurol. Sci. 32 (5), 883-892 (2011)

Quantifying the legacy of the Chinese Neolithic on the maternal genetic heritage of Taiwan and Island Southeast Asia

Brandao,A., Eng,K.K., Rito,T., Cavadas,B., Bulbeck,D., Gandini,F., Pala,M., Mormina,M., Hudson,B., White,J., Ko,T.M., Saidin,M., Zafarina,Z., Oppenheimer,S., Richards,M.B., Pereira,L. and Soares,P.

Hum. Genet. 135 (4), 363-376 (2016) Erratum:[Hum Genet. 2016 May;135(5):587. PMID: 27041535]

Reconstructing Indian-Australian phylogenetic link

Kumar,S., Ravuri,R.R., Koneru,P., Urade,B.P., Sarkar,B.N., Chandrasekar,A. and Rao,V.R.

BMC Evol. Biol. 9, 173 (2009) Publication Status: Online-Only

Updating phylogeny of mitochondrial DNA macrohaplogroup m in India: dispersal of modern human in South Asian corridor

Chandrasekar,A., Kumar,S., Sreenath,J., Sarkar,B.N., Urade,B.P., Mallick,S., Bandopadhyay,S.S., Barua,P., Barik,S.S., Basu,D., Kiran,U., Gangopadhyay,P., Sahani,R., Prasad,B.V., Gangopadhyay,S., Lakshmi,G.R., Ravuri,R.R., Padmaja,K., Venugopal,P.N., Sharma,M.B. and Rao,V.R.

PLoS ONE 4 (10), E7447 (2009) Publication Status: Online-Only

Heteroplasmic substitutions in the entire mitochondrial genomes of human colon cells detected by ultra-deep 454 sequencing

Skonieczna,K., Malyarchuk,B., Jawien,A., Marszalek,A., Banaszkiewicz,Z., Jarmocik,P., Borcz,M., Bala,P. and Grzybowski,T.

Forensic Sci Int Genet 15, 16-20 (2015)

Phylogeny of east Asian mitochondrial DNA lineages inferred from complete sequences

Kong,Q.P., Yao,Y.G., Sun,C., Bandelt,H.J., Zhu,C.L. and Zhang,Y.P.

Am. J. Hum. Genet. 73 (3), 671-676 (2003) Erratum:[Am J Hum Genet. 2004 Jun;75(1):157]

Ancient genomes from North Africa evidence prehistoric migrations to the Maghreb from both the Levant and Europe

Fregel,R., Mendez,F.L., Bokbot,Y., Martin-Socas,D., Camalich-Massieu,M.D., Santana,J., Morales,J., Avila-Arcos,M.C., Underhill,P.A., Shapiro,B., Wojcik,G., Rasmussen,M., Soares,A.E., Kapp,J., Sockell,A., Rodriguez-Santos,F.J., Mikdad,A., Trujillo-Mederos,A. and Bustamante,C.D.

Proc. Natl. Acad. Sci. U.S.A. (2018) In press Publication Status: Available-Online prior to print

Mitochondrial DNA 10609T Promotes Hypoxia-Induced Increase of Intracellular ROS and Is a Risk Factor of High Altitude Polycythemia

Jiang,C., Cui,J., Liu,F., Gao,L., Luo,Y., Li,P., Guan,L. and Gao,Y.

PLoS ONE 9 (1), E87775 (2014) Publication Status: Online-Only

Mitogenomes from Two Uncommon Haplogroups Mark Late Glacial/Postglacial Expansions from the Near East and Neolithic Dispersals within Europe

Olivieri,A., Pala,M., Gandini,F., Hooshiar Kashani,B., Perego,U.A., Woodward,S.R., Grugni,V., Battaglia,V., Semino,O., Achilli,A., Richards,M.B. and Torroni,A.

PLoS ONE 8 (7), E70492 (2013) Publication Status: Online-Only

Resolving the ancestry of Austronesian-speaking populations

Soares,P.A., Trejaut,J.A., Rito,T., Cavadas,B., Hill,C., Eng,K.K., Mormina,M., Brandao,A., Fraser,R.M., Wang,T.Y., Loo,J.H., Snell,C., Ko,T.M., Amorim,A., Pala,M., Macaulay,V., Bulbeck,D., Wilson,J.F., Gusmao,L., Pereira,L., Oppenheimer,S., Lin,M. and Richards,M.B.

Hum. Genet. 135 (3), 309-326 (2016)

The matrilineal ancestry of Ashkenazi Jewry: portrait of a recent founder event

Behar,D.M., Metspalu,E., Kivisild,T., Achilli,A., Hadid,Y., Tzur,S., Pereira,L., Amorim,A., Quintana-Murci,L., Majamaa,K., Herrnstadt,C., Howell,N., Balanovsky,O., Kutuev,I., Pshenichnov,A., Gurwitz,D., Bonne-Tamir,B., Torroni,A., Villems,R. and Skorecki,K.

Am. J. Hum. Genet. 78 (3), 487-497 (2006)

Mitochondrial DNA sequence variation in Finnish patients with matrilineal diabetes mellitus

Soini,H.K., Moilanen,J.S., Finnila,S. and Majamaa,K.

BMC Res Notes 5 (1), 350 (2012)

Phylogenetic network for European mtDNA

Finnila,S., Lehtonen,M.S. and Majamaa,K.

Am. J. Hum. Genet. 68 (6), 1475-1484 (2001)

Lineage-Specific Selection in Human mtDNA: Lack of Polymorphisms in a Segment of MTND5 Gene in Haplogroup J

Moilanen,J.S., Finnila,S. and Majamaa,K.

Mol. Biol. Evol. 20 (12), 2132-2142 (2003)

Investigating the Prehistory of Tungusic Peoples of Siberia and the Amur-Ussuri Region with Complete mtDNA Genome Sequences and Y-chromosomal Markers

Duggan,A.T., Whitten,M., Wiebe,V., Crawford,M., Butthof,A., Spitsyn,V., Makarov,S., Novgorodov,I., Osakovsky,V. and Pakendorf,B.

PLoS ONE 8 (12), E83570 (2013) Publication Status: Online-Only

Reduced-median-network analysis of complete mitochondrial DNA coding-region sequences for the major African, Asian, and European haplogroups

Herrnstadt,C., Elson,J.L., Fahy,E., Preston,G., Turnbull,D.M., Anderson,C., Ghosh,S.S., Olefsky,J.M., Beal,M.F., Davis,R.E. and Howell,N.

Am. J. Hum. Genet. 70 (5), 1152-1171 (2002) Erratum:[Am J Hum Genet 2002 Aug;71(2):448-9]

Decrypting the mitochondrial gene pool of modern panamanians

Perego,U.A., Lancioni,H., Tribaldos,M., Angerhofer,N., Ekins,J.E., Olivieri,A., Woodward,S.R., Pascale,J.M., Cooke,R., Motta,J. and Achilli,A.

PLoS ONE 7 (6), E38337 (2012) Publication Status: Online-Only

Genetic evidence of a recent Tibetan ancestry to Sherpas in the Himalayan region

Bhandari,S., Zhang,X., Cui,C., Bianba, Liao,S., Peng,Y., Zhang,H., Xiang,K., Shi,H., Ouzhuluobu, Baimakongzhuo, Gonggalanzi, Liu,S., Gengdeng, Wu,T., Qi,X. and Su,B.

Sci Rep 5, 16249 (2015) Publication Status: Online-Only

A genetic chronology for the Indian Subcontinent points to heavily sex-biased dispersals

Silva,M., Oliveira,M., Vieira,D., Brandao,A., Rito,T., Pereira,J.B., Fraser,R.M., Hudson,B., Gandini,F., Edwards,C., Pala,M., Koch,J., Wilson,J.F., Pereira,L., Richards,M.B. and Soares,P.

BMC Evol. Biol. 17 (1), 88 (2017) Publication Status: Online-Only

The earliest settlers' antiquity and evolutionary history of Indian populations: evidence from M2 mtDNA lineage

Kumar,S., Padmanabham,P.B., Ravuri,R.R., Uttaravalli,K., Koneru,P., Mukherjee,P.A., Das,B., Kotal,M., Xaviour,D., Saheb,S.Y. and Rao,V.R.

BMC Evol. Biol. 8, 230 (2008) Publication Status: Online-Only

Diverse origin of mitochondrial lineages in Iron Age Black Sea Scythians

Juras,A., Krzewinska,M., Nikitin,A.G., Ehler,E., Chylenski,M., Lukasik,S., Krenz-Niedbala,M., Sinika,V., Piontek,J., Ivanova,S., Dabert,M. and Gotherstrom,A.

Sci Rep 7, 43950 (2017) Publication Status: Online-Only

Single nucleotide polymorphisms over the entire mtDNA genome that increase the power of forensic testing in Caucasians

Coble,M.D., Just,R.S., O'Callaghan,J.E., Letmanyi,I.H., Peterson,C.T., Irwin,J.A. and Parsons,T.J.

Int. J. Legal Med. 118 (3), 137-146 (2004)

Human settlement history between Sunda and Sahul: a focus on East Timor (Timor-Leste) and the Pleistocenic mtDNA diversity

Gomes,S.M., Bodner,M., Souto,L., Zimmermann,B., Huber,G., Strobl,C., Rock,A.W., Achilli,A., Olivieri,A., Torroni,A., Corte-Real,F. and Parson,W.

BMC Genomics 16, 70 (2015) Publication Status: Online-Only

The history of Slavs inferred from complete mitochondrial genome sequences

Mielnik-Sikorska,M., Daca,P., Malyarchuk,B., Derenko,M., Skonieczna,K., Perkova,M., Dobosz,T. and Grzybowski,T.

PLoS ONE 8 (1), E54360 (2013)

Evidence for sub-haplogroup h5 of mitochondrial DNA as a risk factor for late onset Alzheimer's disease

Santoro,A., Balbi,V., Balducci,E., Pirazzini,C., Rosini,F., Tavano,F., Achilli,A., Siviero,P., Minicuci,N., Bellavista,E., Mishto,M., Salvioli,S., Marchegiani,F., Cardelli,M., Olivieri,F., Nacmias,B., Chiamenti,A.M., Benussi,L., Ghidoni,R., Rose,G., Gabelli,C., Binetti,G., Sorbi,S., Crepaldi,G., Passarino,G., Torroni,A. and Franceschi,C.

PLoS ONE 5 (8), E12037 (2010) Publication Status: Online-Only

Matriclans shape populations: Insights from the Angolan Namib Desert into the maternal genetic history of southern Africa

Oliveira,S., Fehn,A.M., Aco,T., Lages,F., Gaya-Vidal,M., Pakendorf,B., Stoneking,M. and Rocha,J.

Am. J. Phys. Anthropol. (2018) In press Publication Status: Available-Online prior to print

The peopling of Europe from the mitochondrial haplogroup U5 perspective

Malyarchuk,B., Derenko,M., Grzybowski,T., Perkova,M., Rogalla,U., Vanecek,T. and Tsybovsky,I.

PLoS ONE 5 (4), E10285 (2010) Publication Status: Online-Only

Genetic diversity and evidence for population admixture in Batak Negritos from Palawan

Scholes,C., Siddle,K., Ducourneau,A., Crivellaro,F., Jarve,M., Rootsi,S., Bellatti,M., Tabbada,K., Mormina,M., Reidla,M., Villems,R., Kivisild,T., Lahr,M.M. and Migliano,A.B.

Am. J. Phys. Anthropol. 146 (1), 62-72 (2011)

Multiple ethnic origins of mitochondrial DNA lineages for the population of mauritius

Fregel,R., Seetah,K., Betancor,E., Suarez,N.M., Calaon,D., Caval,S., Janoo,A. and Pestano,J.

PLoS ONE 9 (3), E93294 (2014) Publication Status: Online-Only

Identification and functional prediction of mitochondrial complex III and IV mutations associated with glioblastoma

Lloyd,R.E., Keatley,K., Littlewood,D.T., Meunier,B., Holt,W.V., An,Q., Higgins,S.C., Polyzoidis,S., Stephenson,K.F., Ashkan,K., Fillmore,H.L., Pilkington,G.J. and McGeehan,J.E.

Neuro-oncology 17 (7), 942-952 (2015)

Carriers of Mitochondrial DNA Macrohaplogroup N Lineages Reached Australia around 50,000 Years Ago following a Northern Asian Route

Fregel,R., Cabrera,V., Larruga,J.M., Abu-Amero,K.K. and Gonzalez,A.M.

PLoS ONE 10 (6), E0129839 (2015) Publication Status: Online-Only

Cybrid studies establish the causal link between the mtDNA m.3890G>A/MT-ND1 mutation and optic atrophy with bilateral brainstem lesions

Caporali,L., Ghelli,A.M., Iommarini,L., Maresca,A., Valentino,M.L., La Morgia,C., Liguori,R., Zanna,C., Barboni,P., De Nardo,V., Martinuzzi,A., Rizzo,G., Tonon,C., Lodi,R., Calvaruso,M.A., Cappelletti,M., Porcelli,A.M., Achilli,A., Pala,M., Torroni,A. and Carelli,V.

Biochim. Biophys. Acta 1832 (3), 445-452 (2013)

Indian signatures in the westernmost edge of the European romani diaspora: new insight from mitogenomes

Gomez-Carballa,A., Pardo-Seco,J., Fachal,L., Vega,A., Cebey,M., Martinon-Torres,N., Martinon-Torres,F. and Salas,A.

PLoS ONE 8 (10), E75397 (2013) Publication Status: Online-Only

Neolithic mitochondrial haplogroup H genomes and the genetic origins of Europeans

Brotherton,P., Haak,W., Templeton,J., Brandt,G., Soubrier,J., Jane Adler,C., Richards,S.M., Sarkissian,C.D., Ganslmeier,R., Friederich,S., Dresely,V., van Oven,M., Kenyon,R., Van der Hoek,M.B., Korlach,J., Luong,K., Ho,S.Y., Quintana-Murci,L., Behar,D.M., Meller,H., Alt,K.W., Cooper,A., Adhikarla,S., Ganesh Prasad,A.K., Pitchappan,R., Varatharajan Santhakumari,A., Balanovska,E., Balanovsky,O., Bertranpetit,J., Comas,D., Martinez-Cruz,B., Mele,M., Clarke,A.C., Matisoo-Smith,E.A., Dulik,M.C., Gaieski,J.B., Owings,A.C., Schurr,T.G., Vilar,M.G., Hobbs,A., Soodyall,H., Javed,A., Parida,L., Platt,D.E., Royyuru,A.K., Jin,L., Li,S., Kaplan,M.E., Merchant,N.C., John Mitchell,R., Renfrew,C., Lacerda,D.R., Santos,F.R., Soria Hernanz,D.F., Spencer Wells,R., Swamikrishnan,P., Tyler-Smith,C., Paulo Vieira,P. and Ziegle,J.S.

Nat Commun 4, 1764 (2013) Publication Status: Online-Only

Origin and expansion of haplogroup H, the dominant human mitochondrial DNA lineage in West Eurasia: the Near Eastern and Caucasian perspective

Roostalu,U., Kutuev,I., Loogvali,E.L., Metspalu,E., Tambets,K., Reidla,M., Khusnutdinova,E.K., Usanga,E., Kivisild,T. and Villems,R.

Mol. Biol. Evol. 24 (2), 436-448 (2007)

Novel non-neutral mitochondrial DNA mutations found in childhood acute lymphoblastic leukemia

Jarviaho,T., Hurme-Niiranen,A., Soini,H.K., Niinimaki,R., Mottonen,M., Savolainen,E.R., Hinttala,R., Harila-Saari,A. and Uusimaa,J.

Clin. Genet. (2017) In press Publication Status: Available-Online prior to print

Phylogeography of mtDNA haplogroup R7 in the Indian peninsula

Chaubey,G., Karmin,M., Metspalu,E., Metspalu,M., Selvi-Rani,D., Singh,V.K., Parik,J., Solnik,A., Naidu,B.P., Kumar,A., Adarsh,N., Mallick,C.B., Trivedi,B., Prakash,S., Reddy,R., Shukla,P., Bhagat,S., Verma,S., Vasnik,S., Khan,I., Barwa,A., Sahoo,D., Sharma,A., Rashid,M., Chandra,V., Reddy,A.G., Torroni,A., Foley,R.A., Thangaraj,K., Singh,L., Kivisild,T. and Villems,R.

BMC Evol. Biol. 8, 227 (2008) Publication Status: Online-Only

Mitochondrial DNA haplogroups M7b1'2 and M8a affect clinical expression of leber hereditary optic neuropathy in Chinese families with the m.11778G-->a mutation

Ji,Y., Zhang,A.M., Jia,X., Zhang,Y.P., Xiao,X., Li,S., Guo,X., Bandelt,H.J., Zhang,Q. and Yao,Y.G.

Am. J. Hum. Genet. 83 (6), 760-768 (2008)

The MT-ND1 and MT-ND5 genes are mutational hotspots for Chinese families with clinical features of LHON but lacking the three primary mutations

Zou,Y., Jia,X., Zhang,A.M., Wang,W.Z., Li,S., Guo,X., Kong,Q.P., Zhang,Q. and Yao,Y.G.

Biochem. Biophys. Res. Commun. 399 (2), 179-185 (2010)

Deep sequencing reveals the mitochondrial DNA variation landscapes of breast-to-brain metastasis blood samples

McGeehan,R.E., Cockram,L.A., Littlewood,D.T.J., Keatley,K., Eccles,D.M. and An,Q.

Mitochondrial DNA A DNA Mapp Seq Anal, 1-11 (2017) In press Publication Status: Available-Online prior to print

Whole mitochondrial DNA sequencing in Alpine populations and the genetic history of the Neolithic Tyrolean Iceman

Coia,V., Cipollini,G., Anagnostou,P., Maixner,F., Battaggia,C., Brisighelli,F., Gomez-Carballa,A., Destro Bisol,G., Salas,A. and Zink,A.

Sci Rep 6, 18932 (2016) Publication Status: Online-Only

Helena, the hidden beauty: Resolving the most common West Eurasian mtDNA control region haplotype by massively parallel sequencing an Italian population sample

Bodner,M., Iuvaro,A., Strobl,C., Nagl,S., Huber,G., Pelotti,S., Pettener,D., Luiselli,D. and Parson,W.

Forensic Sci Int Genet (2014) In press Publication Status: Available-Online prior to print